Table 1 |
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List of some selected genes that contain the IS2 element. |
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| Gene name and ID |
Locationa |
Surrounding IS2 sequencesb |
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| dbj|AP009048.1| Escherichia coli W3110, complete genome, Length = 4646332 |
3742928-3744271 2320789-2322130 381819-380478 2071073-2072413 4504197-4502855 1105615-1106957 1302369-1301034 1469618-1470959 2995017-2996347 3186087-3184747 1653272-1652545 |
GAAATTGG...TCTAGAAATTGG GATCGTGG...TCTAGATCGT GTAATTGG...TCTAGTAATT GTGGCTGG...TCTAGTGGC ACAAGGTGG...TCTACAAGG AACCCTTGT...TCTAACCCT TAATATCTGT...TCTAATATC GAACCCTGT...TCTAAACCC tttatTGG...TCTaaacttg ATAACTGG...TCTAATAAC acctgTGG...Ttcgtc |
| dbj|AP008210.1| Oryza sativa, chromosome 4, Length = 35498469 |
27366872-27368214 11718374-11719715 13525525-13524204 |
AGAAAGTGG...TCTAGAAAG GTTAGTGG...TCTAGTTAGT AGAGATTGG...TCTAGAGATT |
| emb|AL731613.5|OSJN00257Oryza sativa, chromosome 4, Length = 133967 |
18027-19368 |
AGAAAGTGG...TCTAGAAAG |
| gb|AC004776.1| Homo sapiens, chromosome 5, Length = 89626 |
20138-18796 |
ATTTCCTGG...TCTATTTCCT |
| gb|AC018501.9| Homo sapiens, chromosome 3, Length = 202070 |
72232-70890 |
TATCTGGTGG...TCTATCTGG |
| gb|AC170856.2| Medicago truncatula, chromosome 2, Length = 101215 |
69921-68580 |
TCAAGTGG...TCTATCAAGT |
| gb|AC191971.14| Rhesus Macaque, genomic DNA, Length = 174949 |
169869-171210 |
ACACAGTGG...TCTACACAG |
| gb|AC202613.6| Rhesus macaque, genomic DNA, Length = 181783 |
146766-145426 |
GTTCCTGG...TCTAGTTCC |
| gb|AC200594.3| Rhesus macaque, genomic DNA, Length = 171745 |
99933-98589 |
TAGGTGTTTGG...TCTAGTGTTT |
| gb|AC198308.7| Rhesus Macaque, genomic DNA, Length = 143534 |
76175-74834 |
GTTTGTGG...TCTAGTTTGT |
| gb|AC196863.3| Macaca mulatta, chromosome 2, Length = 172779 |
155658-154318 |
CAAACTGG...TCTACAAAC |
| gb|AC193812.4| Canis Familiaris, chromosome 13, Length = 196541 |
31412-30070 |
TAGATCTTGG...TCTAGATCT |
| gb|AC187015.8| Canis familiaris, chromosome 33, Length = 215278 |
178002-176660 |
TAGTTGGTGG...TCTAGTTGG |
| dbj|AK229126.1| Arabidopsis thaliana, cDNA, Length = 4564 |
2374-3716 |
AAAGAGTGG...TCTAAAGAGT |
| dbj|AK229400.1| Arabidopsis thaliana, cDNA, Length = 3239 |
869-2210 |
AGAAGGTGG...TCTAGAAGG |
| gb|AY064986.1| Arabidopsis thaliana, cDNA, Length = 3309 |
1180-2523 |
TAGAAGGTGG...TCTAGAAGGT |
| dbj|AK226701.1| Arabidopsis thaliana, cDNA, Length = 5499 |
3369-2028 |
AGAATTTGG...TCTAGAATT |
| gb|AC193907.3| Pan troglodytes, chromosome x, Length = 161221 |
90423-91765 |
AGCAGGTGG...TCTAGCAGGT |
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aThe location and the duplicated nucleotides bsurrounding IS2 sequences are shown. The underlined sequences are the first and last triplet nucleotides of the IS2 element. |
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Senejani and Sweasy Genome Integrity 2010 1:2 doi:10.1186/2041-9414-1-2 |
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