Table 2 |
|||||||
|
Copy number variation events larger than 10 kb |
|||||||
|
No |
Type |
Chr |
Start |
End |
Length |
Log R |
Shared |
|
|
|||||||
|
1 |
Self1 |
chr13 |
48,998,999 |
49,016,999 |
18,000 |
0.5168 |
Yes |
|
chr3 |
1,020,294 |
1,039,699 |
19,405 |
0.6721 |
Yes |
||
|
chr4 |
41,465,452 |
41,496,569 |
31,117 |
0.6946 |
Yes |
||
|
2 |
High1 |
chr13 |
48,992,999 |
49,010,999 |
18,000 |
0.6269 |
Yes |
|
chr3 |
1,020,294 |
1,039,699 |
19,405 |
0.6410 |
Yes |
||
|
chr4 |
33,570,495 |
33,584,300 |
13,805 |
0.5216 |
Yes |
||
|
chr4 |
41,465,452 |
41,496,569 |
31,117 |
0.5674 |
Yes |
||
|
3 |
Low1 |
chr13 |
48,991,360 |
49,017,997 |
26,637 |
0.6818 |
Yes |
|
chr29 |
19,400,430 |
19,449,274 |
48,844 |
0.5343 |
Yes |
||
|
chr3 |
1,020,294 |
1,042,839 |
22,545 |
0.7566 |
Yes |
||
|
chr4 |
41,465,452 |
41,496,569 |
31,117 |
0.8130 |
Yes |
||
|
4 |
Self2 |
chr13 |
48,991,360 |
49,017,997 |
26,637 |
0.5172 |
Yes |
|
chr3 |
1,020,294 |
1,042,839 |
22,545 |
0.6039 |
Yes |
||
|
chr4 |
41,465,452 |
41,496,569 |
31,117 |
0.5761 |
Yes |
||
|
5 |
High2 |
chr25 |
32,373,045 |
32,464,814 |
91,769 |
0.6769 |
Yes |
|
6 |
Low2 |
chr11 |
87,532,580 |
87,543,090 |
10,510 |
-0.5617 |
No |
|
chr2 |
16,958,057 |
16,968,620 |
10,563 |
-0.5814 |
No |
||
|
chr25 |
32,374,157 |
32,471,634 |
97,477 |
-0.8136 |
Yes |
||
|
chr29 |
43,204,051 |
43,223,301 |
19,250 |
-0.5334 |
No |
||
|
chrX |
10,447,331 |
10,457,486 |
10,155 |
-0.9137 |
No |
||
|
7 |
Self3 |
chr1 |
5,249,999 |
5,285,999 |
36,000 |
0.5481 |
Yes |
|
chr10 |
59,478,526 |
59,531,204 |
52,678 |
0.5501 |
No |
||
|
chr13 |
48,991,360 |
49,017,997 |
26,637 |
0.6809 |
Yes |
||
|
chr15 |
26,576,999 |
26,602,199 |
25,200 |
0.6474 |
Yes |
||
|
chr2 |
39,223,655 |
39,235,168 |
11,513 |
-0.5661 |
No |
||
|
chr25 |
32,374,157 |
32,471,634 |
97,477 |
-0.6113 |
Yes |
||
|
chr29 |
19,399,250 |
19,449,274 |
50,024 |
0.6094 |
Yes |
||
|
chr3 |
1,020,294 |
1,039,699 |
19,405 |
0.8678 |
Yes |
||
|
chr4 |
27,707,990 |
27,750,008 |
42,018 |
0.5614 |
No |
||
|
chr4 |
41,465,452 |
41,496,569 |
31,117 |
0.8426 |
Yes |
||
|
chr6 |
45,738,703 |
45,776,348 |
37,645 |
0.5049 |
Yes |
||
|
chr6 |
89,209,799 |
89,220,599 |
10,800 |
0.6477 |
Yes |
||
|
chr8 |
36,073,799 |
36,145,799 |
72,000 |
0.5122 |
Yes |
||
|
chrX |
37,290,568 |
37,303,155 |
12,587 |
0.8150 |
No |
||
|
chrX |
37,564,199 |
37,614,599 |
50,400 |
0.5427 |
No |
||
|
chrX |
56,120,456 |
56,149,298 |
28,842 |
0.6124 |
No |
||
|
chrX |
84,230,177 |
84,255,543 |
25,366 |
0.5679 |
No |
||
|
chrX |
138,374,999 |
138,386,999 |
12,000 |
0.5528 |
No |
||
|
8 |
High3 |
chr13 |
48,993,325 |
49,013,328 |
20,003 |
0.5149 |
Yes |
|
chr15 |
26,576,999 |
26,602,199 |
25,200 |
0.6022 |
Yes |
||
|
chr25 |
32,374,157 |
32,403,637 |
29,480 |
-0.8278 |
Yes |
||
|
chr4 |
33,564,599 |
33,578,999 |
14,400 |
0.5363 |
Yes |
||
|
chr4 |
41,466,599 |
41,495,399 |
28,800 |
0.5097 |
Yes |
||
|
chr6 |
45,744,065 |
45,772,999 |
28,934 |
0.5284 |
Yes |
||
|
9 |
Low3 |
chr1 |
5,249,999 |
5,285,999 |
36,000 |
0.5559 |
Yes |
|
chr1 |
144,107,850 |
144,130,905 |
23,055 |
0.5949 |
No |
||
|
chr13 |
48,991,360 |
49,017,997 |
26,637 |
0.6031 |
Yes |
||
|
chr17 |
73,139,605 |
73,159,081 |
19,476 |
-2.0603 |
No |
||
|
chr18 |
6,080,815 |
6,121,152 |
40,337 |
-0.5749 |
No |
||
|
chr25 |
32,362,844 |
32,470,747 |
107,903 |
0.6669 |
Yes |
||
|
chr29 |
19,412,812 |
19,444,215 |
31,403 |
0.6690 |
Yes |
||
|
chr3 |
1,020,599 |
1,038,599 |
18,000 |
0.6787 |
Yes |
||
|
chr4 |
33,564,599 |
33,578,999 |
14,400 |
0.6100 |
Yes |
||
|
chr4 |
41,465,452 |
41,487,890 |
22,438 |
0.6229 |
Yes |
||
|
chr6 |
89,208,198 |
89,218,288 |
10,090 |
0.6937 |
Yes |
||
|
chr8 |
36,077,399 |
36,152,999 |
75,600 |
0.5089 |
Yes |
||
|
chrU |
12,620,478 |
12,665,758 |
45,280 |
0.7441 |
No |
||
|
10 |
Self4 |
chr13 |
48,992,999 |
49,010,999 |
18,000 |
0.5729 |
Yes |
|
|
|||||||
|
Chr: chromosome, Log R: log2Ratio, Shared: Yes/No - events shared among samples (i.e. hybridizations) or not. |
|||||||
|
Liu et al. Genome Integrity 2011 2:6 doi:10.1186/2041-9414-2-6 |
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